3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01036

Details:

PFam ID : PF01036

PFam Domain Description : Bacteriorhodopsin-like protein

Number of Sequence in 50% Dataset : 84

Number of Sequence in Full Dataset : 606

Average sequence length: 158.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01036	D7CW88_TRURR_32_285	97.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01036	Q5KEJ2_CRYNE_56_296	100

Sequence based PCA Plot of the family - PF01036 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=123 Length=8
Motif3 Start=68 Length=11
Motif4 Start=171 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay