3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01035

Details:

PFam ID : PF01035

PFam Domain Description : 6-O-methylguanine DNA methyltransferase, DNA binding domain

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 2405

Average sequence length: 84.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01035	E7H2D4_9BURK_112_217	80.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01035	E7H2D4_9BURK_112_217	100

Sequence based PCA Plot of the family - PF01035 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=38 Length=11
Motif3 Start=1 Length=8
Motif4 Start=53 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay