3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01032

Details:

PFam ID : PF01032

PFam Domain Description : FecCD transport family

Number of Sequence in 50% Dataset : 528

Number of Sequence in Full Dataset : 4164

Average sequence length: 304.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01032	E5YP77_9BACL_1_86	87.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01032	E4M3B4_9FIRM_8_358	100

Sequence based PCA Plot of the family - PF01032 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=6 Length=8
Motif3 Start=16 Length=8
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay