3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01031

Details:

PFam ID : PF01031

PFam Domain Description : Dynamin central region

Number of Sequence in 50% Dataset : 177

Number of Sequence in Full Dataset : 770

Average sequence length: 208.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01031	C3Z3S4_BRAFL_234_284	78.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01031	D8PV97_SCHCM_518_654	100

Sequence based PCA Plot of the family - PF01031 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=249 Length=8
Motif3 Start=289 Length=8
Motif4 Start=13 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay