3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01029

Details:

PFam ID : PF01029

PFam Domain Description : NusB family

Number of Sequence in 50% Dataset : 331

Number of Sequence in Full Dataset : 2132

Average sequence length: 125.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01029	Q7WZG5_STRGR_17_61	92.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01029	NUSB_THEEB_6_201	99.9

Sequence based PCA Plot of the family - PF01029 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay