3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01028

Details:

PFam ID : PF01028

PFam Domain Description : Eukaryotic DNA topoisomerase I, catalytic core

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 397

Average sequence length: 227.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01028	Q4SR65_TETNG_422_740	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01028	D6PB97_9ARCH_84_365	100

Sequence based PCA Plot of the family - PF01028 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=42 Length=8
Motif2 Start=33 Length=8
Motif3 Start=24 Length=8
Motif4 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay