3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01027

Details:

PFam ID : PF01027

PFam Domain Description : Inhibitor of apoptosis-promoting Bax1

Number of Sequence in 50% Dataset : 261

Number of Sequence in Full Dataset : 1371

Average sequence length: 200.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01027	F0ZXX3_DICPU_8_246	87.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01027	D8CBY3_ECOLX_1_65	98.8

Sequence based PCA Plot of the family - PF01027 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=45 Length=8
Motif3 Start=8 Length=8
Motif4 Start=73 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay