3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01026

Details:

PFam ID : PF01026

PFam Domain Description : TatD related DNase

Number of Sequence in 50% Dataset : 495

Number of Sequence in Full Dataset : 2574

Average sequence length: 253.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01026	A4H3N6_LEIBR_101_491	93.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01026	B8B7D7_ORYSI_9_211	99.6

Sequence based PCA Plot of the family - PF01026 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=46 Length=11
Motif3 Start=1 Length=8
Motif4 Start=13 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay