3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01025

Details:

PFam ID : PF01025

PFam Domain Description : GrpE

Number of Sequence in 50% Dataset : 304

Number of Sequence in Full Dataset : 1777

Average sequence length: 179.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01025	Q4Y6X6_PLACH_1_37	92.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01025	Q114Z9_TRIEI_15_210	100

Sequence based PCA Plot of the family - PF01025 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=97 Length=8
Motif2 Start=72 Length=11
Motif3 Start=153 Length=8
Motif4 Start=128 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay