3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01022

Details:

PFam ID : PF01022

PFam Domain Description : Bacterial regulatory protein, arsR family

Number of Sequence in 50% Dataset : 172

Number of Sequence in Full Dataset : 2861

Average sequence length: 46.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01022	C1D0M5_DEIDV_16_63	57.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01022	C7DH53_9EURY_5_50	99.7

Sequence based PCA Plot of the family - PF01022 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=34 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay