3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01019

Details:

PFam ID : PF01019

PFam Domain Description : Gamma-glutamyltranspeptidase

Number of Sequence in 50% Dataset : 396

Number of Sequence in Full Dataset : 1853

Average sequence length: 446.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01019	F0XDU6_9PEZI_42_642	71.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01019	B0A7R7_9CLOT_1_119	100

Sequence based PCA Plot of the family - PF01019 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=479 Length=17
Motif2 Start=30 Length=11
Motif3 Start=445 Length=14
Motif4 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay