3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01018

Details:

PFam ID : PF01018

PFam Domain Description : GTP1/OBG

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 1291

Average sequence length: 144.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01018	B0D4M1_LACBS_1_43	94.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01018	F0VNZ6_NEOCA_80_133	100

Sequence based PCA Plot of the family - PF01018 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=30 Length=8
Motif3 Start=21 Length=8
Motif4 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay