3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01014

Details:

PFam ID : PF01014

PFam Domain Description : Uricase

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 414

Average sequence length: 136.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01014	D3Z4U1_MOUSE_2_72	59.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01014	C0NVE8_AJECG_154_214	51

Sequence based PCA Plot of the family - PF01014 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=40 Length=8
Motif2 Start=81 Length=8
Motif3 Start=52 Length=8
Motif4 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay