3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01012

Details:

PFam ID : PF01012

PFam Domain Description : Electron transfer flavoprotein domain

Number of Sequence in 50% Dataset : 327

Number of Sequence in Full Dataset : 2624

Average sequence length: 158.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01012	C0CRD0_9FIRM_6_148	69.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01012	C0CRD0_9FIRM_6_148	99.7

Sequence based PCA Plot of the family - PF01012 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=107 Length=8
Motif2 Start=37 Length=8
Motif3 Start=128 Length=11
Motif4 Start=78 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay