3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01010

Details:

PFam ID : PF01010

PFam Domain Description : NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 2024

Average sequence length: 212.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01010	B0SFU3_LEPBA_483_589	73.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01010	NU5C_ANGEV_448_708	99.8

Sequence based PCA Plot of the family - PF01010 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=21
Motif2 Start=43 Length=17
Motif3 Start=74 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay