3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01008

Details:

PFam ID : PF01008

PFam Domain Description : Initiation factor 2 subunit family

Number of Sequence in 50% Dataset : 214

Number of Sequence in Full Dataset : 1332

Average sequence length: 278.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01008	A8PUF1_MALGO_31_451	68.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01008	Q91VS5_MOUSE_4_51	100

Sequence based PCA Plot of the family - PF01008 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=249 Length=8
Motif2 Start=347 Length=8
Motif3 Start=396 Length=26

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay