3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01007

Details:

PFam ID : PF01007

PFam Domain Description : Inward rectifier potassium channel

Number of Sequence in 50% Dataset : 121

Number of Sequence in Full Dataset : 348

Average sequence length: 250.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01007	E5SCJ4_TRISP_112_311	73.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01007	A0PGH1_HUMAN_21_81	99.7

Sequence based PCA Plot of the family - PF01007 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay