3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01006

Details:

PFam ID : PF01006

PFam Domain Description : Hepatitis C virus non-structural protein NS4a

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 60

Average sequence length: 53.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01006	O40647_9FLAV_682_712	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01006	Q81253_9HEPC_1_41	86

Sequence based PCA Plot of the family - PF01006 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay