3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01004

Details:

PFam ID : PF01004

PFam Domain Description : Flavivirus non-structural Protein NS1

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 61

Average sequence length: 71.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01004	D3X8G2_WNV_1_23	81.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01004	A0EKU6_9FLAV_206_281	100

Sequence based PCA Plot of the family - PF01004 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay