3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01002

Details:

PFam ID : PF01002

PFam Domain Description : Flavivirus non-structural protein NS4A

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 119

Average sequence length: 122.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01002	A0EKU7_9FLAV_1357_1487	5.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01002	B9TRQ0_9FLAV_1378_1505	100

Sequence based PCA Plot of the family - PF01002 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay