3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01001

Details:

PFam ID : PF01001

PFam Domain Description : Hepatitis C virus non-structural protein NS4b

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 43

Average sequence length: 164.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01001	D3W905_9HEPC_294_330	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01001	POLG_GBVB_1616_1812	100

Sequence based PCA Plot of the family - PF01001 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=1 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay