3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00998

Details:

PFam ID : PF00998

PFam Domain Description : Viral RNA dependent RNA polymerase

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 595

Average sequence length: 162.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00998	F2YSA2_9TOMB_1_61	57.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00998	O92096_BVDV_226_383	99.8

Sequence based PCA Plot of the family - PF00998 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=27 Length=8
Motif4 Start=129 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay