3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00997

Details:

PFam ID : PF00997

PFam Domain Description : Kappa casein

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 37

Average sequence length: 131.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00997	F2D2E2_HORVD_30_92	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00997	CASK_CAVPO_22_181	100

Sequence based PCA Plot of the family - PF00997 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=17 Length=27
Motif2 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay