3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00996

Details:

PFam ID : PF00996

PFam Domain Description : GDP dissociation inhibitor

Number of Sequence in 50% Dataset : 136

Number of Sequence in Full Dataset : 410

Average sequence length: 318.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00996	F2D2E2_HORVD_30_92	59.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00996	F2PWG3_TRIEQ_318_400	99.7

Sequence based PCA Plot of the family - PF00996 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=47 Length=8
Motif2 Start=10 Length=17
Motif3 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay