3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00993

Details:

PFam ID : PF00993

PFam Domain Description : Class II histocompatibility antigen, alpha domain

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 513

Average sequence length: 74.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00993	Q67DY2_9PERO_3_31	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00993	Q8MGS1_DANRE_1_83	99.0

Sequence based PCA Plot of the family - PF00993 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=21 Length=8
Motif3 Start=45 Length=8
Motif4 Start=3 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay