3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00992

Details:

PFam ID : PF00992

PFam Domain Description : Troponin

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 220

Average sequence length: 118.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00992	D3YTL4_MOUSE_15_60	18.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00992	C4QDB3_SCHMA_179_295	92.2

Sequence based PCA Plot of the family - PF00992 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=11 Length=8
Motif3 Start=2 Length=8
Motif4 Start=108 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay