3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00990

Details:

PFam ID : PF00990

PFam Domain Description : GGDEF domain

Number of Sequence in 50% Dataset : 5331

Number of Sequence in Full Dataset : 16657

Average sequence length: 152.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00990	A0P381_9RHOB_322_424	93.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00990	B4WYM5_9GAMM_216_280	99.9

Sequence based PCA Plot of the family - PF00990 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=67 Length=8
Motif2 Start=49 Length=8
Motif3 Start=1 Length=8
Motif4 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay