3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00988

Details:

PFam ID : PF00988

PFam Domain Description : Carbamoyl-phosphate synthase small chain, CPSase domain

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 1545

Average sequence length: 122.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00988	C7M0V8_ACIFD_11_147	73.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00988	F2EGF2_HORVD_3_62	100

Sequence based PCA Plot of the family - PF00988 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=49 Length=29
Motif2 Start=33 Length=14
Motif3 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay