3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00984

Details:

PFam ID : PF00984

PFam Domain Description : UDP-glucose/GDP-mannose dehydrogenase family, central domain

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 1788

Average sequence length: 94.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00984	A1RZI3_THEPD_152_243	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00984	D1CAP6_SPHTD_158_261	100

Sequence based PCA Plot of the family - PF00984 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=43 Length=8
Motif3 Start=53 Length=11
Motif4 Start=12 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay