3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00982

Details:

PFam ID : PF00982

PFam Domain Description : Glycosyltransferase family 20

Number of Sequence in 50% Dataset : 174

Number of Sequence in Full Dataset : 924

Average sequence length: 417.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00982	Q98P66_RHILO_21_116	78.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00982	A5AEP4_VITVI_58_132	100

Sequence based PCA Plot of the family - PF00982 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=365 Length=11
Motif2 Start=43 Length=8
Motif3 Start=144 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay