3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00977

Details:

PFam ID : PF00977

PFam Domain Description : Histidine biosynthesis protein

Number of Sequence in 50% Dataset : 172

Number of Sequence in Full Dataset : 2226

Average sequence length: 227.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00977	E3YDE0_LISMO_1_53	87.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00977	E6ZML4_9BASI_252_414	100

Sequence based PCA Plot of the family - PF00977 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=86 Length=17
Motif2 Start=14 Length=8
Motif3 Start=26 Length=8
Motif4 Start=63 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay