3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00976

Details:

PFam ID : PF00976

PFam Domain Description : Corticotropin ACTH domain

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 83

Average sequence length: 35.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00976	B5B3P7_PAROL_182_214	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00976	B5B3P7_PAROL_182_214	96.3

Sequence based PCA Plot of the family - PF00976 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=15 Length=8
Motif2 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay