3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00975

Details:

PFam ID : PF00975

PFam Domain Description : Thioesterase domain

Number of Sequence in 50% Dataset : 1091

Number of Sequence in Full Dataset : 2313

Average sequence length: 223.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00975	E9FJM6_9STRE_238_377	98.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00975	Q5VUC0_HUMAN_48_122	99.9

Sequence based PCA Plot of the family - PF00975 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=242 Length=11
Motif3 Start=64 Length=23
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay