3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00972

Details:

PFam ID : PF00972

PFam Domain Description : Flavivirus polyprotein propeptide

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 204

Average sequence length: 187.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00972	B1P6F7_9FLAV_33_217	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00972	B1P6I1_9FLAV_32_112	99.5

Sequence based PCA Plot of the family - PF00972 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=63 Length=8
Motif3 Start=76 Length=8
Motif4 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay