3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00971

Details:

PFam ID : PF00971

PFam Domain Description : EIAV coat protein, gp90

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 65

Average sequence length: 178.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00971	A3RGG0_9RETR_1_111	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00971	Q5I354_9RETR_1_249	100

Sequence based PCA Plot of the family - PF00971 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=115 Length=8
Motif2 Start=85 Length=11
Motif3 Start=56 Length=8
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay