3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00970

Details:

PFam ID : PF00970

PFam Domain Description : Oxidoreductase FAD-binding domain

Number of Sequence in 50% Dataset : 411

Number of Sequence in Full Dataset : 4573

Average sequence length: 96.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00970	F1W0R7_9BURK_529_590	87.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00970	F1W0R7_9BURK_529_590	99.9

Sequence based PCA Plot of the family - PF00970 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=24
Motif3 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay