3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00969

Details:

PFam ID : PF00969

PFam Domain Description : Class II histocompatibility antigen, beta domain

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 3441

Average sequence length: 67.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00969	Q95602_MOUSE_27_106	56.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00969	B2XBN8_SALSA_34_109	96.7

Sequence based PCA Plot of the family - PF00969 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=12 Length=11
Motif2 Start=29 Length=26
Motif3 Start=61 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay