3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00964

Details:

PFam ID : PF00964

PFam Domain Description : Elicitin

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 165

Average sequence length: 87.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00964	ELI2_PYTOL_23_119	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00964	D0MY26_PHYIT_49_133	98.7

Sequence based PCA Plot of the family - PF00964 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=67 Length=8
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay