3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00963

Details:

PFam ID : PF00963

PFam Domain Description : Cohesin domain

Number of Sequence in 50% Dataset : 129

Number of Sequence in Full Dataset : 282

Average sequence length: 138.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00963	Q9FDJ9_9FIRM_2075_2239	28.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00963	D4LEP5_9FIRM_221_279	100

Sequence based PCA Plot of the family - PF00963 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=1 Length=8
Motif3 Start=13 Length=8
Motif4 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay