3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00962

Details:

PFam ID : PF00962

PFam Domain Description : Adenosine/AMP deaminase

Number of Sequence in 50% Dataset : 290

Number of Sequence in Full Dataset : 1544

Average sequence length: 309.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00962	D9RWZ1_PREMB_57_395	79.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00962	E5T8I6_TRISP_11_129	97.0

Sequence based PCA Plot of the family - PF00962 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=14 Length=17
Motif2 Start=1 Length=8
Motif3 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay