3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00960

Details:

PFam ID : PF00960

PFam Domain Description : Neocarzinostatin family

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 14

Average sequence length: 101.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00960	Q2NV03_SODGM_42_108	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00960	D8I4I3_AMYMU_37_149	100

Sequence based PCA Plot of the family - PF00960 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay