3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00958

Details:

PFam ID : PF00958

PFam Domain Description : GMP synthase C terminal domain

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 775

Average sequence length: 97.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00958	B1ZPM0_OPITP_227_319	61.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00958	F0ZK25_DICPU_322_412	100

Sequence based PCA Plot of the family - PF00958 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=41 Length=8
Motif3 Start=28 Length=8
Motif4 Start=75 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay