3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00955

Details:

PFam ID : PF00955

PFam Domain Description : HCO3- transporter family

Number of Sequence in 50% Dataset : 113

Number of Sequence in Full Dataset : 616

Average sequence length: 237.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00955	E4XZK2_OIKDI_639_953	96.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00955	C1E0U4_MICSR_207_408	100

Sequence based PCA Plot of the family - PF00955 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=8 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay