3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00953

Details:

PFam ID : PF00953

PFam Domain Description : Glycosyl transferase family 4

Number of Sequence in 50% Dataset : 280

Number of Sequence in Full Dataset : 2279

Average sequence length: 171.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00953	D6YRP6_WADCW_104_325	93.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00953	D6YRP6_WADCW_104_325	100

Sequence based PCA Plot of the family - PF00953 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=44 Length=8
Motif4 Start=84 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay