3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00952

Details:

PFam ID : PF00952

PFam Domain Description : Bunyavirus nucleocapsid (N) protein

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 50

Average sequence length: 211.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00952	C1JJF2_9VIRU_8_236	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00952	C1JJF2_9VIRU_8_236	100

Sequence based PCA Plot of the family - PF00952 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=175 Length=8
Motif2 Start=86 Length=8
Motif3 Start=151 Length=8
Motif4 Start=140 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay