3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00951

Details:

PFam ID : PF00951

PFam Domain Description : Arterivirus GL envelope glycoprotein

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 320

Average sequence length: 166.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00951	P89139_SHFV_111_277	30.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00951	Q9WD43_EAV_32_173	96.8

Sequence based PCA Plot of the family - PF00951 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay