3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00950

Details:

PFam ID : PF00950

PFam Domain Description : ABC 3 transport family

Number of Sequence in 50% Dataset : 242

Number of Sequence in Full Dataset : 1909

Average sequence length: 247.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00950	B9NTV2_9RHOB_8_297	23.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00950	B9NTV2_9RHOB_8_297	100

Sequence based PCA Plot of the family - PF00950 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=30
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay