3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00948

Details:

PFam ID : PF00948

PFam Domain Description : Flavivirus non-structural protein NS2A

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 80

Average sequence length: 259.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00948	Q3ZPL3_9FLAV_558_583	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00948	Q9J9C2_9FLAV_758_1109	100

Sequence based PCA Plot of the family - PF00948 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=40 Length=8
Motif2 Start=1 Length=8
Motif3 Start=31 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay