3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00944

Details:

PFam ID : PF00944

PFam Domain Description : Alphavirus core protein

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 16

Average sequence length: 113.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00944	Q3LRQ8_SFV_112_268	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00944	Q80GB5_SINDV_109_139	100

Sequence based PCA Plot of the family - PF00944 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=105 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay