3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00943

Details:

PFam ID : PF00943

PFam Domain Description : Alphavirus E2 glycoprotein

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 48

Average sequence length: 241.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00943	A4L794_CHIKV_1_33	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00943	C7EPG4_WEEV_330_733	100

Sequence based PCA Plot of the family - PF00943 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=113 Length=8
Motif3 Start=101 Length=8
Motif4 Start=85 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay